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These steps should be completed in chronological order, and are described in more detail on their own pages:
  1. Preprocessing (Allegra)
  2. Initialize data (Allegra) into mrVista format
  3. Alignment (Allegra)
  4. Install segmentation
  5. 3D mesh visualization

Once data has been initialized in mrVista format, various quality/sanity checks can be done before moving on to the next step (recommended). Note that steps (4) and (5) are discussed more fully under anatomical methods and may have already been completed while processing anatomical data. They are included here as they are prerequisites for a number of general functional data analyses.

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